Package: CooccurrenceAffinity 1.0

CooccurrenceAffinity: Affinity in Co-Occurrence Data

Computes a novel metric of affinity between two entities based on their co-occurrence (using binary presence/absence data). The metric and its MLE, alpha hat, were advanced in Mainali, Slud, et al, 2021 <doi:10.1126/sciadv.abj9204>. Various types of confidence intervals and median interval were developed in Mainali and Slud, 2022 <doi:10.1101/2022.11.01.514801>.

Authors:Kumar Mainali [aut, cre], Eric Slud [aut]

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Peer review:

Bug tracker:https://github.com/kpmainali/cooccurrenceaffinity/issues

On CRAN:

18 exports 25 stars 2.23 score 33 dependencies 11 scripts 208 downloads

Last updated 1 years agofrom:37a2c58a18. Checks:OK: 3 NOTE: 4. Indexed: yes.

Exports:AcceptAffCIAcceptAffinaffinityaffinity2by2AlphIntsBisectCovrgCovrgPlotdataprepEHypMidPEHypQuIntlogLikExtHypMaxX.IntmidP.EHypminmaxAlpha.pFNCHMinX.IntML.Alphaplotgg

Dependencies:BiasedUrnclicolorspacecowplotfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshaperlangscalestibbleutf8vctrsviridisLitewithr